PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P21920_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21097 Da PI: 9.3625 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GSMUA_Achr11P21920_001 59 YECKTCNKCFPSFQALGGHRTSH 81 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H GSMUA_Achr11P21920_001 107 HECSICGSEFSSGQALGGHMRRH 129 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.2E-10 | 58 | 129 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 58 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.346 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.7E-4 | 105 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.764 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 107 | 129 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-11 | 107 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MANCLILLAQ GRALEARPPP DQARKDDAAG RGGGAEKFTS RRFAEAATTT NGKAGFYVYE 60 CKTCNKCFPS FQALGGHRTS HKKPKLAPPP TTAAEEKVVS NTKPKIHECS ICGSEFSSGQ 120 ALGGHMRRHR PLAAADAQEA KKDKSFLSLD LNLPAPADEE LHRPPSPSFT LASKRPLIFP 180 APVSASASAS ALVVDCHY |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384553.1 | 1e-133 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | M0RUC2 | 1e-142 | M0RUC2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21920_001 | 1e-143 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 4e-34 | C2H2 family protein |