PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P18680_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 231aa MW: 25635.9 Da PI: 8.8817 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.7 | 1.5e-06 | 123 | 160 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L++A+eYIk L GSMUA_Achr11P18680_001 123 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 160 67788899********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.481 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.71E-7 | 121 | 165 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-12 | 121 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-10 | 121 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-4 | 122 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MHDHRHHHVL SSNASCELPS STLLPGLLEP DSRLQRSFHD HREQLQRSAS ARSPQFSNET 60 CFWNPSAGDG SNLIVKVSVE AITSSSTIIR SSSSTMEKRN GSEPALKKAR TETPSPLPTF 120 KVRKEKLGDR ITALQQLVSP FGKTDTASVL QEAIEYIKFL HDQVRVLSAP YLKNGHQMQQ 180 VKSLDSSKDS GEQNQDLRSR GLCLVPMSST FAVANEIPAD LWTPPFIGTF R |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384213.1 | 1e-159 | PREDICTED: transcription factor bHLH103-like isoform X1 | ||||
Swissprot | Q94JL3 | 1e-51 | BH112_ARATH; Transcription factor bHLH112 | ||||
TrEMBL | M0RTE8 | 1e-170 | M0RTE8_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P18680_001 | 1e-171 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.3 | 2e-52 | bHLH family protein |
Publications ? help Back to Top | |||
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