PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P17900_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 237aa MW: 26499.1 Da PI: 10.4408

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P17900_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103	1.8e-32	92	145	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GSMUA_Achr11P17900_001 92 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 145 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-29	89	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.0E-15	89	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	92	145	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	93	144	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MELFPAHPDL SLQISPPNSK PTASWSRTAD GNLGLGPIMP IRGVPVYHRP PAFHFGLRNR 60 QHQPHPCDST SPSRSTPRLL PRFPAKRSTR APRMRWTTTL HARFVHAVEL LGGHERATPK 120 SVLELMDVKD LTLAHVKSHL QMYRTVKTSD RQAASPGTAA SMSFGQAEFI EFSDDNLLEI 180 QGPGASTQQG RSNGDRGTND HGSWSNSARC RICINIFISA QFFYSKSYFF FLIDLFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	93	147	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	93	147	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018676555.1	1e-135	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	4e-44	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M0RT70	1e-176	M0RT70_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P17900_001	1e-176	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-46	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]