PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P15580_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 466aa MW: 51197.6 Da PI: 7.7652

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P15580_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.5	1.3e-37	99	158	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s ntkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+g+rk+k++ GSMUA_Achr11P15580_001 99 PDKILPCPRCNSLNTKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNLPVGSGKRKSKNA 158 7899****************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	96	156	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	101	157	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	103	157	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	105	141	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MSQARDPAIK LFGLTIPPQD GQGTAEPPGE SSSPSERDEK VSEERQMVDL QKPSTSSGLN 60 NGNGDEVSTQ NDEESSGQKH EKDNSEANTS GQEKTLKKPD KILPCPRCNS LNTKFCYYNN 120 YNVNQPRHFC KKCQRYWTAG GTMRNLPVGS GKRKSKNAAV HHHSHIGVPS QGMIGNRVLK 180 RNETVSKFDS EGPLCESMAA VLNLEDQMNS CHENSEEGSC TTSVTPSNCM ENDPLKVASG 240 MEKNHIQSYS NGVTHMSNLP CFPRLTWPCT WPLVPWPPQV MASSLQCQPV IPFPFFPASH 300 WGHMSSWPKD TWNVTCVRPS CDLLSSSSIS NNGCPSNNPP TLGKHSRDAI SESVEKTEKT 360 LWVPKTLRID DPDEAAKSSI WATLGISPGK KIKRGGGIFE AFQSKSDNNQ PSDATKVLHA 420 NPAAMNGTGK YMLIMLSFAV RSLIKFCRIF VNLEDGTSSS YTVMLI

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MSQARDPAIK LFGLTIPPQD GQGTAEPPGE SSSPSERDEK VSEERQMVDL QKPSTSSGLN  60
NGNGDEVSTQ NDEESSGQKH EKDNSEANTS GQEKTLKKPD KILPCPRCNS LNTKFCYYNN  120
YNVNQPRHFC KKCQRYWTAG GTMRNLPVGS GKRKSKNAAV HHHSHIGVPS QGMIGNRVLK  180
RNETVSKFDS EGPLCESMAA VLNLEDQMNS CHENSEEGSC TTSVTPSNCM ENDPLKVASG  240
MEKNHIQSYS NGVTHMSNLP CFPRLTWPCT WPLVPWPPQV MASSLQCQPV IPFPFFPASH  300
WGHMSSWPKD TWNVTCVRPS CDLLSSSSIS NNGCPSNNPP TLGKHSRDAI SESVEKTEKT  360
LWVPKTLRID DPDEAAKSSI WATLGISPGK KIKRGGGIFE AFQSKSDNNQ PSDATKVLHA  420
NPAAMNGTGK YMLIMLSFAV RSLIKFCRIF VNLEDGTSSS YTVMLI

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018675658.1	0.0	PREDICTED: cyclic dof factor 3
TrEMBL	M0RSI8	0.0	M0RSI8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P15580_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-68	cycling DOF factor 2