PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P02250_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 193aa MW: 20624.4 Da PI: 8.6888 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.8 | 0.0016 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H GSMUA_Achr11P02250_001 58 YECKTCSKCFPSFQALGGHRTSH 80 99**********99998888777 PP | |||||||
2 | zf-C2H2 | 14.5 | 0.0001 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H GSMUA_Achr11P02250_001 106 HECSICGSEFSSGQALGGHMRRH 128 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.08E-9 | 57 | 128 | No hit | No description |
Pfam | PF13912 | 4.4E-10 | 57 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.346 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 104 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.2E-12 | 105 | 129 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.764 | 106 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MANCLILLAQ GRAFDTGPKP EEHKDEAGGG GGGSEKFTSR KLIEAATTTN GKAGIYVYEC 60 KTCSKCFPSF QALGGHRTSH KKHKLAATTT TAEEKKLETP TKPKVHECSI CGSEFSSGQA 120 LGGHMRRHRP LAIADSQEAK KDKSFLSLDL NLPAPADDEL QRPPSPTLAL ATKRPFIFSA 180 SASAPALVVD CHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009382162.1 | 1e-129 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | M0RNQ5 | 1e-139 | M0RNQ5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P02250_001 | 1e-140 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-30 | C2H2 family protein |