PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P00350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 300aa    MW: 32191.3 Da    PI: 6.4396
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P00350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.5e-13100151155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+++  A++++k+L+
  GSMUA_Achr11P00350_001 100 QRMTHIAVERNRRRQMNEHLAVLRSLMPES---YIQRGDQASVVGGAIDFVKELE 151
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.11E-1398155No hitNo description
SuperFamilySSF474592.88E-1798170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.35199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14100168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.048222298IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MTLEALASAE LSSFLIYDTI TASPLLHHAE PSSSSSFLFR SAGGEDAVGS LGIGPSRSGL  60
VGGIPAAKEE PRPEAAAVGQ GKRKRRRTRT CKNMEEAENQ RMTHIAVERN RRRQMNEHLA  120
VLRSLMPESY IQRGDQASVV GGAIDFVKEL EQLLQSLEAQ KRTLQQQAGK QERSSYIGEA  180
GSSSSSSGSS GSNSDGQDHP PSENQLPALA DIEVTLIETH ANVRILSPKR PGQLFKMVAG  240
LHNLSLTILH LNVTALDSMV LYSLSVKVEE GCSLTAVDDI AAAIHHLLSL IEAEVTALAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18186KRKRRR
28286RKRRR
38287RKRRRT
4100111RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381950.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T42e-67BH096_ARATH; Transcription factor bHLH96
TrEMBLM0RN660.0M0RN66_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P00350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]