PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P28700_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TALE | ||||||||
Protein Properties | Length: 260aa MW: 29554.4 Da PI: 7.6824 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30 | 9.1e-10 | 187 | 221 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ eLA+++gL+++q+ +WF N+R ++ GSMUA_Achr10P28700_001 187 KWPYPSETEKVELAESTGLDQKQINNWFINQRKRH 221 679*****************************885 PP | |||||||
2 | ELK | 32.5 | 1.9e-11 | 141 | 161 | 1 | 21 |
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELKh+Ll+KY+gyL+ L+qE+ GSMUA_Achr10P28700_001 141 ELKHHLLKKYGGYLSRLRQEL 161 9*******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03790 | 7.0E-17 | 1 | 36 | IPR005540 | KNOX1 |
SMART | SM01255 | 1.2E-11 | 1 | 38 | IPR005540 | KNOX1 |
Pfam | PF03789 | 2.5E-8 | 141 | 161 | IPR005539 | ELK domain |
SMART | SM01188 | 4.9E-6 | 141 | 162 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.209 | 141 | 161 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.426 | 161 | 224 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-13 | 163 | 228 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.22E-20 | 163 | 237 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 166 | 226 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.36E-14 | 173 | 225 | No hit | No description |
Pfam | PF05920 | 2.9E-17 | 181 | 220 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 199 | 222 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSHPHYSTLV AAFTDCQKVG APPEVVARLS TIARELASGP SCHNGTSDPD PELDQFMTAF 60 SLSNNIYKRS RTPHVGVSNS FFDLISTPII GITIIITAKG ISIRSTLYEN CEGFGSSEED 120 QNATGDYQVD PQDIDPHADK ELKHHLLKKY GGYLSRLRQE LTKKKKKGKL PKEARQKLLN 180 WWQLHYKWPY PSETEKVELA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDGFYPQN 240 ASALYMEGQF MGDGIYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}. | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}. | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018674744.1 | 1e-143 | PREDICTED: homeobox protein rough sheath 1-like | ||||
Swissprot | O04135 | 1e-91 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
Swissprot | O65034 | 7e-92 | KNOSC_ORYSI; Homeobox protein knotted-1-like 12 | ||||
Swissprot | O80416 | 7e-92 | KNOSC_ORYSJ; Homeobox protein knotted-1-like 12 | ||||
TrEMBL | M0RM94 | 0.0 | M0RM94_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P28700_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4061 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 7e-85 | KNOTTED-like from Arabidopsis thaliana |