PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P27180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 399aa MW: 43881.2 Da PI: 6.0965

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P27180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.8e-32	197	252	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSMUA_Achr10P27180_001 197 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 252 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.355	194	254	IPR017930	Myb domain
SuperFamily	SSF46689	6.57E-17	194	255	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	195	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-26	197	252	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-7	199	250	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MGSPPELSLD YKLDNYTAVA KAAGAQPEQN QKIQEFLARL EEERHKIEVF KRELPLCMQL 60 LNNAIEIYKQ QLQERVPLKY MNVDGSDKAN WMVSAQLWSP PDDAAKQQAA PPPKEADVIP 120 KLALDTTKQR SGGAFLPFSR EKSRGAHATS AEKVVEEEKK CAELENEIVN TGRHSAADGH 180 GNTADGQAAA APPTHRKARR CWSPDLHRRF VNALQMLGGS QVATPKQIRE LMKVDGLTND 240 EVKSHLQKYR LHTRRPIPAP HAAAGAGAPP QLVVLGGIWV PPEYATSAGP AMYGAHAAPV 300 PREFYSPVPH HHYHHLHYPP LGLGASTPAA SRGRTADSPE PEVRSGGERS ESIEEEEEEV 360 RKRDEEEEEE EAPASEEKAL VPLMVKAEDD NGGDVVLKI

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MGSPPELSLD YKLDNYTAVA KAAGAQPEQN QKIQEFLARL EEERHKIEVF KRELPLCMQL  60
LNNAIEIYKQ QLQERVPLKY MNVDGSDKAN WMVSAQLWSP PDDAAKQQAA PPPKEADVIP  120
KLALDTTKQR SGGAFLPFSR EKSRGAHATS AEKVVEEEKK CAELENEIVN TGRHSAADGH  180
GNTADGQAAA APPTHRKARR CWSPDLHRRF VNALQMLGGS QVATPKQIRE LMKVDGLTND  240
EVKSHLQKYR LHTRRPIPAP HAAAGAGAPP QLVVLGGIWV PPEYATSAGP AMYGAHAAPV  300
PREFYSPVPH HHYHHLHYPP LGLGASTPAA SRGRTADSPE PEVRSGGERS ESIEEEEEEV  360
RKRDEEEEEE EAPASEEKAL VPLMVKAEDD NGGDVVLKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	197	250	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	197	250	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	197	250	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	197	250	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	197	250	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381136.2	0.0	PREDICTED: myb family transcription factor EFM-like isoform X1
Refseq	XP_018675067.1	0.0	PREDICTED: myb family transcription factor EFM-like isoform X1
Swissprot	Q5VRW2	1e-87	NOH1_ORYSJ; Transcription factor NIGTH1
Swissprot	Q9ZQ85	2e-88	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	M0RLU2	0.0	M0RLU2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P27180_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9773	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-77	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]