PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P18380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 516aa    MW: 54982 Da    PI: 4.9649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P18380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11329371754
                             HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  GSMUA_Achr10P18380_001 329 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 371
                             79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-16325392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9328371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-13329375No hitNo description
Gene3DG3DSA:4.10.280.105.3E-16329385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048735.25E-5446488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MFSRIDGGFW MDDGGDDDGP VAWTRGNASS SSGGGMGEPK EDELGLSGFK SMLVDDWYVG  60
AAAHHPFEAF QTQQDLKDVA FLPNPSPHEA LLLPPVDSLD QSQPFFSSRP ALSSVFNASN  120
HFGVGVDLRS DAPGFLPAVP VLNPPDLMNG GGGAIDGVFG FVGIGTSGQL GCPELNSASQ  180
FSGALLLPPA ENCSVSSSGT AFCPVGFDSL ENSPFLNRSK VLRPLEMFPT AGSQPTLFQK  240
RAAAALLQNS VATAEKKERK RKGNEVDELD EGSIDGSGLH YDSDDFAGEC AKVEENAGNV  300
AGGGGNSSSA DVMVADRGKK KGLPAKNLMA ERRRRKKLND RLYMLRSVVP KISKMDRASI  360
LGDAIEYLKE LLQRINDLQN ELESTPSSSS LPTTNATSLH PLTPTLPTLP CRLKDELKHC  420
SSSLPSPNSQ PARVEVKARE GRAVDIHMFC ARRPGLLLSA LRSLDSLGLD IQQAVISCFN  480
GFALDIFQAE QCKDPGVLPE EIKAVLLHSA GLLNTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14324381663Transcription factor MYC2
5gnj_B3e-14324381663Transcription factor MYC2
5gnj_E3e-14324381663Transcription factor MYC2
5gnj_F3e-14324381663Transcription factor MYC2
5gnj_G3e-14324381663Transcription factor MYC2
5gnj_I3e-14324381663Transcription factor MYC2
5gnj_M3e-14324381663Transcription factor MYC2
5gnj_N3e-14324381663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318336KKKGLPAKNLMAERRRRKK
2330337ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1575700.0KC157570.1 Musa AB Group inducer of CBF expression 1-2 (ICE1-2) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009380116.10.0PREDICTED: transcription factor ICE1-like
TrEMBLM0RJB30.0M0RJB3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P18380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-83bHLH family protein