PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P15780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family E2F/DP
Protein Properties Length: 440aa    MW: 48949.5 Da    PI: 5.1308
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P15780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP811e-25145210171
                 E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             r+++sL+llt+kf++ll+++++gi++ln++++ L   +v  ++RRiYDi+NVLe+++l+ek+ kn+i+wkg
  GSMUA_Achr10P15780_001 145 RYDSSLGLLTKKFINLLRHAQDGILDLNKATEIL---KV--QKRRIYDITNVLEGIGLVEKTLKNRISWKG 210
                             6899******************************...88..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.0E-27143212IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-16145208IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-33145210IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-22147210IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.37E-46221327No hitNo description
SuperFamilySSF1440741.12E-31224327No hitNo description
PfamPF164213.3E-32226325IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSSIQAAGKQ PAQQPGQMFQ PSKQCLPFAS SRPPFVLLDG HQGFSAAVGR SGGGDDMADA  60
LVIKTPLKRK SVQEDNEAKV LHERATSTGY AVGFTSPLLT PVSEKVRKTY SKSKISKHSK  120
SSTQTLLSYA GSPPGNNLTP VGNSRYDSSL GLLTKKFINL LRHAQDGILD LNKATEILKV  180
QKRRIYDITN VLEGIGLVEK TLKNRISWKG LDDMGPVEVD DDASILQEEI DKLTLEECRL  240
DELISQMQER LRDLSEDESN HKWLYVTKDD ISHLPCFQNK TLIAIKAPHG TTLEVPDPDE  300
AEEYPQRRYR IVLRSTMGAI DVYLVSQFED KYEGMSGVEM PPKVLPISNS GSVENYMVPF  360
VTEESRGNGM EVDIQHSERI WSDVNSSRDF DGGMMKIVPS DIDTEADYWL LSDAGASITD  420
MWKTACILSK TLLSFFYVLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-23133211174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177183LKVQKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379820.10.0PREDICTED: transcription factor E2FB-like isoform X1
SwissprotQ9FV711e-127E2FB_ARATH; Transcription factor E2FB
TrEMBLM0RIK30.0M0RIK3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P15780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-124E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]