PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P15240_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Nin-like

Protein Properties

Length: 548aa MW: 60403.1 Da PI: 7.5364

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P15240_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	67.8	1.6e-21	279	323	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 +++++++sk Fslpi++AA Lgvc++vLK+iCR yGI RWP+Rk GSMUA_Achr10P15240_001 279 TLTFDEISKLFSLPIAEAAPVLGVCTSVLKKICRDYGIVRWPYRK 323 799*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04450	1.8E-28	53	255	IPR007541	Uncharacterised protein family, basic secretory protein
PROSITE profile	PS51519	16.597	262	346	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-19	279	323	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MEQPLLASPP NIVPNSRPPP AKSSNPNILV GLTIFLVVAA FSLLANYEAA KGFQIVVVNA 60 ALHTHAGRRF DLLFVSNDRA TRLVVASSNL VQRILYPDDS FPRKPVDRVT LYMAGEDLDS 120 TVAVRGGRSA GEFVVRMSPA VMEAADVKAA VAEAVQRGMA RVWLWDGRGE APRSLLDAMA 180 EWVAMSSGMA SPSIRPRNTS VSPFNASCWE DDDHVRLASF LNYCDAKHHG FVARLNRAMQ 240 DEWTEDTFNV TLGSSLEASA SRSPRPQQQQ QARPPPSGTL TFDEISKLFS LPIAEAAPVL 300 GVCTSVLKKI CRDYGIVRWP YRKYLAGKTV EDIRRDIAKE RSKELADLSK TNQKNDVSNV 360 MSSPVGSLSA LTPNPAQESS KMQRVSMPGH VSQLQGSRFT QNGWPNVLHQ NQSKNIPTFM 420 DDFKYGFPEN GLSSTSFKWW GISRLEETER TVPGEGETTT EKDDNQEVQD SSNEGEEPDS 480 GAEDNVIVTK PSALLCSLRR KSVEYGRESL KRGISVAGIP NKLTKRQKLT LSQVFGSSLP 540 EEWKENFS

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MEQPLLASPP NIVPNSRPPP AKSSNPNILV GLTIFLVVAA FSLLANYEAA KGFQIVVVNA  60
ALHTHAGRRF DLLFVSNDRA TRLVVASSNL VQRILYPDDS FPRKPVDRVT LYMAGEDLDS  120
TVAVRGGRSA GEFVVRMSPA VMEAADVKAA VAEAVQRGMA RVWLWDGRGE APRSLLDAMA  180
EWVAMSSGMA SPSIRPRNTS VSPFNASCWE DDDHVRLASF LNYCDAKHHG FVARLNRAMQ  240
DEWTEDTFNV TLGSSLEASA SRSPRPQQQQ QARPPPSGTL TFDEISKLFS LPIAEAAPVL  300
GVCTSVLKKI CRDYGIVRWP YRKYLAGKTV EDIRRDIAKE RSKELADLSK TNQKNDVSNV  360
MSSPVGSLSA LTPNPAQESS KMQRVSMPGH VSQLQGSRFT QNGWPNVLHQ NQSKNIPTFM  420
DDFKYGFPEN GLSSTSFKWW GISRLEETER TVPGEGETTT EKDDNQEVQD SSNEGEEPDS  480
GAEDNVIVTK PSALLCSLRR KSVEYGRESL KRGISVAGIP NKLTKRQKLT LSQVFGSSLP  540
EEWKENFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009421485.1	0.0	PREDICTED: uncharacterized protein LOC104001033
TrEMBL	M0RIF0	0.0	M0RIF0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P15240_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-10	RWP-RK domain-containing protein