PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 518aa    MW: 57848.2 Da    PI: 6.4722
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.8e-31115168255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  GSMUA_Achr10P14250_001 115 PRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 168
                             8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.536111171IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-29111169IPR009057Homeodomain-like
SuperFamilySSF466894.48E-14114169IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-22115170IPR006447Myb domain, plants
PfamPF002498.9E-9116167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MGEEKDKEVV GGHEDDERSV GSSRSPSQKR PLEVLDLNED VTIDSSEGEE EEEEEVAEDG  60
DDDGDGGSST EVARGGSSSN NSSTDNNFNN KSGDTTEGSS GRAPTVRQYV RSKLPRLRWT  120
PDLHLAFVHA VERLGGQERA TPKLVLQLMN VRGLSIAHVK SHLQMYRSKK LDGSGQEKSA  180
ISSVMTPMDL HLKEHRLHEM FYRRTDSFQP FRLDNGGFFS SRSIHEPDQF CNAFFHGSQF  240
LKASVLRSSN FGHREWEFNR QAAAWDSCLR DQGPSKGLIH DMIFSQKRKP STSHLFDVRD  300
AISGNGNPRT VHQFLEGRRW SPADMIEARK WEGNRTGNFG SSGYPLAKAV PADPVSGNTL  360
FGWKGNSNIC IDTMQSNSHV PIVVNDELPP NSQQPFQVDE SRRRQDKPLR NSEDMHAKTE  420
TPMKDAKKMR MATTTKDLTP DLQLSLRSSL INDGGYEKKS LETEQVNSML SLSLSPSTSM  480
QREKHMKAEM QFLEIGSSKK AVLGLSTLDL TMSIRASE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-18116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-18116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-18116170357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-18116170357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421270.10.0PREDICTED: uncharacterized protein LOC104000854 isoform X2
TrEMBLM0RI510.0M0RI51_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-35G2-like family protein