PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P09040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 343aa    MW: 37567.9 Da    PI: 6.4842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P09040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.1e-16104150455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  GSMUA_Achr10P09040_001 104 VHNMSEKRRRSRINEKMRALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 150
                             6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-2097165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.771100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-18103154No hitNo description
Gene3DG3DSA:4.10.280.104.7E-19104157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13104150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-17106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MIVAVCFDSS SSFSCQGGQG RISCFSSSCA VGASSWKAEQ MLTSSCYPIS GGGGGGSGGG  60
SKSLDHDFDS FECESEESVE VPEEHTKPVP ARSSGSKRSR AAEVHNMSEK RRRSRINEKM  120
RALQNLIPNS NKTDKASMLD EAIEYLKQLQ LQVQVSKCCQ VLLSSCCSVV WLVHTNNLVF  180
ELQICTLVSR SLFCLGHIFS FFLYFMLMIN CLLFLFSLQI LSMKNGLNLH SMYLSGGLQP  240
FRTSQTCIGF GLNGNIAMNN RTGMLPLNQD SPVRSSFDLS NQCTTIEPSL INVTNLETPL  300
VNPVESQRGS VQVPVSCEEM LTSDLLTQLY AADYTRDLTG KLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14960SGGGGGGSGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420906.11e-121PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLM0RGN00.0M0RGN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P09040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-20bHLH family protein