PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 163aa    MW: 17711.1 Da    PI: 6.855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000594163123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C+k+F++   L  H  +H
  GSMUA_Achr10P06730_001 41 YQCKTCNKCFPSFQALGGHRTSH 63
                            9***********99998888777 PP
2zf-C2H214.20.000137698123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C++Cg  F++   L  H+r+H
  GSMUA_Achr10P06730_001 76 HECSICGSEFPSGQALGGHMRRH 98
                            78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.4E-114065IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-84098No hitNo description
SMARTSM003550.0674163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6164168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139128.0E-1375100IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.30576103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MANCLILLSR GRALDADPPG TQAAAEETAM ATTGKAAPDV YQCKTCNKCF PSFQALGGHR  60
TSHKKPKADE DRPRVHECSI CGSEFPSGQA LGGHMRRHRP ITPAEPPEAK KEKHVLSLDL  120
NLPAPPDDDR EEPPRPTSSA MPFPFELQQP LVFSASALVD CHY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420453.11e-104PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X42e-35ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0RG001e-116M0RG00_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06730_0011e-117(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-29C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]