PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P02050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GeBP
Protein Properties Length: 423aa    MW: 47091.5 Da    PI: 5.5445
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P02050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57399.72.6e-31221320297
                  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskeh 84 
                             lfqrlw++e ei +L+G+ +f++k+g+   +++ d+  fye +kk+ +++++k+ql+eK+rrLKkK++++v++  + gk ++f+++h
  GSMUA_Achr10P02050_001 221 LFQRLWTDEEEIKILRGFFEFTSKRGTtfASHQyDTGPFYEEIKKQFQIEFTKNQLIEKLRRLKKKYRNCVSRmGSVGKGFAFKSSH 307
                             79************************99977778***************************************78899********* PP

                  DUF573  85 dqkifelskkiWg 97 
                             ++ i++++++iW 
  GSMUA_Achr10P02050_001 308 ERAIYDIARRIWS 320
                             ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.5E-30222320IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTTHRKQIRN TVTRVNVQRT ARFLSVQREL KQSSCLSAPS VPISKPNPKP EPHAYVVLDR  60
SIKEEEEEMP TAEEAEQERP VFDDDDDDDV SESVGSEDDD VDGNGHATPP SSQLQAPTEP  120
SVVVAAESGG LHPSASSDQA TNLNPNPNTT LFDPTAAALS PPQNGAIPVP VLPIAAISSP  180
SADAAFFNPT SSSVAVPGTT TSASEERRSL AVVSFDESRR LFQRLWTDEE EIKILRGFFE  240
FTSKRGTTFA SHQYDTGPFY EEIKKQFQIE FTKNQLIEKL RRLKKKYRNC VSRMGSVGKG  300
FAFKSSHERA IYDIARRIWS AGSKRVHESD DEDLNTSNNA ISDEIIAVPI NDGSLGSHRR  360
ISRSRRCMRR RMAEDVATVD ATTAVDDKWR KQQILELEVY LKRIELVMDH IKATMEELKS  420
AAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419889.10.0PREDICTED: probable transcription factor At5g28040
TrEMBLM0REN20.0M0REN2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P02050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-39DNA-binding storekeeper protein-related transcriptional regulator