PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00158442001

Common Name

GSBRNA2T00158442001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 271aa MW: 30740.2 Da PI: 5.4062

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00158442001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.4	7.2e-36	61	153	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+y+++ed+++++++sws+ +nsf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k GSBRNA2T00158442001 61 FLTKTYDLVEDSRTNHVVSWSQAKNSFIVWDPQAFSTTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQK 141 9**************************************************************999.........********* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r+k++ GSBRNA2T00158442001 142 HLLKTIRRRKTN 153 *******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.54E-35	56	150	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.6E-39	57	150	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.4E-59	57	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.3E-32	61	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-19	61	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-19	99	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	100	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.8E-19	112	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MDPSYRFIKE EFPTGFIVSP SPPSSSTYSY LYSTSMVPND PTTSSSPQPI EGLHESGPPP 60 FLTKTYDLVE DSRTNHVVSW SQAKNSFIVW DPQAFSTTLL PRFFKHNNFS SFVRQLNTYG 120 FRKVNPDRWE FANEGFLRGQ KHLLKTIRRR KTNNCCIEVG RRDKQNPDFL QQLMEHKDKS 180 KDMEEAIRKK RQRTIDQGTS DVVNVEDCDV NVGGGSSSRF VDMKQDIYGD MTEFDMSELD 240 GLAMDIEGLG GQFTGEEVLD QLGYLGSSSH *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-24	52	152	17	131	Heat shock factor protein 1
5d5v_B	1e-24	52	152	17	131	Heat shock factor protein 1
5d5v_D	1e-24	52	152	17	131	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	189	KDKSKDMEEAIRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00158442001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189327	1e-146	AC189327.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB037A01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013623226.1	1e-147	PREDICTED: heat stress transcription factor A-6b-like
Refseq	XP_013739498.2	1e-147	heat stress transcription factor A-6b-like
Swissprot	Q9LUH8	1e-110	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A398A8T7	1e-146	A0A398A8T7_BRACM; Uncharacterized protein
STRING	Bo3g081420.1	1e-146	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1256	28	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-108	heat shock transcription factor A6B

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]