PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00156280001
Common NameGSBRNA2T00156280001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 290aa    MW: 32959.1 Da    PI: 8.7917
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00156280001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.35.7e-20215249135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp g+ktLCnaCG+++r+ +l
  GSBRNA2T00156280001 215 CTHCETTKTPQWREGPTGPKTLCNACGVRFRSGRL 249
                          *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-17209259IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.952209245IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-15212272No hitNo description
Gene3DG3DSA:3.30.50.102.0E-15213246IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.67E-17214263No hitNo description
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
PfamPF003208.8E-18215249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKFTRFFILE CTNYPYYTKK VIMNWLPEEE LKGLSDNFFD DFINHIDFPL EDIDTTNGEG  60
DWDAKFKELE PPPMDMFTTF PSEFNSCGVA SKDGIKKNVS VLKQSDASAA LSGINDTLHQ  120
SSSHHDVKVS KLFQSSSPVS VLESSDGSFS PQNSTSQRLT FPVKGLRSKR KRPTTLRRRH  180
LYPFEPEKLT PEESESSEQH AKKKRKIFTT NHTVCTHCET TKTPQWREGP TGPKTLCNAC  240
GVRFRSGRLV PEYRPASSPT FIPSVHSNSH RKIIEMRSRE GDQFDKRAV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00156280001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895183e-77AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009148049.10.0PREDICTED: GATA transcription factor 11
RefseqXP_009148050.10.0PREDICTED: GATA transcription factor 11
SwissprotQ6DBP81e-125GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A3P5YPV50.0A0A3P5YPV5_BRACM; Uncharacterized protein
STRINGBra018665.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.21e-109GATA transcription factor 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]