PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00155054001
Common NameGSBRNA2T00155054001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 268aa    MW: 29750.2 Da    PI: 10.0626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00155054001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-1394141355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r h ++ErrRR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+Lq
  GSBRNA2T00155054001  94 RDHIMAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIKYLKHLQ 141
                          5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.74591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1094141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1795157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1695153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.75E-1296145No hitNo description
SMARTSM003531.2E-1397146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MMTNFPTPEE LNDILSLPSL QTMEPQLYSH QSPVVTTLNA EAAKQLKHRS YMNTTTNQCS  60
SGFGEYGGMG NLQAKKEPTL LAQRNVSRGV SQARDHIMAE RRRREKLSQR FIALSTIVPG  120
LKKTDKASVL GGTIKYLKHL QDRVRFLEEQ ASQRTIESVV YLNKSRLSVA DTELERIALP  180
EIEARSSGKN VLIRVHCERR KGVVEITMAE IEKLKLTVIN SSVITFGSSS LHLTIISQMG  240
EGFNITTKDV ATSIKSSLEA FMNANLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
2100105RRRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00155054001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741176.10.0transcription factor bHLH25-like
SwissprotQ9T0722e-51BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3P6A5D70.0A0A3P6A5D7_BRACM; Uncharacterized protein
STRINGBra013128.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-53bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]