PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00154880001

Common Name

GSBRNA2T00154880001, LOC106389669

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 295aa MW: 32195.2 Da PI: 6.6289

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00154880001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.8	4.5e-32	37	91	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFveav++LGG+ekAtPkt++++m+vkgLtl+h+kSHLQk+R GSBRNA2T00154880001 37 KPRLRWTAELHERFVEAVTELGGPEKATPKTLMRTMGVKGLTLYHLKSHLQKFRQ 91 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-30	34	91	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.882	34	94	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-15	36	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-22	37	91	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-7	39	89	IPR001005	SANT/Myb domain
Pfam	PF14379	1.4E-26	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MYSAIRSLPL DGGEYHGPLD GTNLPGDACL VLTTDPKPRL RWTAELHERF VEAVTELGGP 60 EKATPKTLMR TMGVKGLTLY HLKSHLQKFR QGRQACKEST DNSNKDASCV GESQDTGSSS 120 PSSLKLAAQE QNESYQVTEA LRAQMEVQRR LHEQLEVQRR LQVRIEAQGK YLQSILEKAC 180 KAFEEQAAMF TGLETAREEL SELAIKVSNS SQGATVPYFD ATKMMMMMPS LSELEVAAID 240 HKSNITTTNC SVESSLTSNT NGSSVSAASM KKRHRGGDNV GYEGSWTVPS STIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	37	93	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	37	93	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.768	0.0	flower\| leaf\| microspore-derived embryo\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00154880001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135873.1	0.0	PREDICTED: protein PHR1-LIKE 2-like isoform X2
Refseq	XP_013685443.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	0.0	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A398A2I5	0.0	A0A398A2I5_BRACM; Uncharacterized protein
TrEMBL	M4CCJ7	0.0	M4CCJ7_BRARP; Uncharacterized protein
STRING	Bra001927.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3515	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-179	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106389669

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]