PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00154440001 | ||||||||
Common Name | GSBRNA2T00154440001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GATA | ||||||||
Protein Properties | Length: 260aa MW: 28081.2 Da PI: 6.228 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.6 | 5.4e-16 | 191 | 227 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp++Rrgp+g++tLCnaCGl++ ++g+ GSBRNA2T00154440001 191 CTHCGVSStcTPMMRRGPSGPRTLCNACGLFWVSRGT 227 ********************************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 1.8E-13 | 59 | 94 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 14.957 | 59 | 94 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.3E-13 | 61 | 93 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 11.747 | 123 | 165 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.3E-14 | 123 | 165 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 10.831 | 185 | 241 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.7E-17 | 185 | 238 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-12 | 186 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-15 | 189 | 232 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.13E-17 | 190 | 239 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 191 | 218 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-13 | 191 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MFPQLEINPY QIGSTLGEDH VSASAAHIPY IHEIANHPDS IYAASGLIPD GSQLLDSPAP 60 EGANQLTISY RGQVYVFDAV GPEKVDAVLS LLGGSTAPQE MEIAQQNHMP VVEHQSRCSH 120 PQRAQSLDRF RKKRSARCFA NQVRYGVRQE VALRMPRNKG QFSSAKTADG AYNSGTDQDN 180 AHDDGRPEIS CTHCGVSSTC TPMMRRGPSG PRTLCNACGL FWVSRGTLRD LSKKTEDNQV 240 AMIEPGELGG DADANNSDL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10204 | 1e-140 | flower| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00154440001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013737991.1 | 0.0 | GATA transcription factor 25-like | ||||
Swissprot | Q9LRH6 | 1e-132 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A0D3DFV5 | 0.0 | A0A0D3DFV5_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g109540.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5006 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-134 | GATA-type zinc finger protein with TIFY domain |
Publications ? help Back to Top | |||
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