PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153299001
Common NameGSBRNA2T00153299001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 247aa    MW: 27154.2 Da    PI: 4.9392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153299001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.4e-13180225655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  GSBRNA2T00153299001 180 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKALQ 225
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16177236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.71E-12178229No hitNo description
Gene3DG3DSA:4.10.280.108.2E-16179237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-10180225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQSTNGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EGDLKPNLCL TELLTGSSAR  60
DSFEFPSSVE QGLYNHQGGG FHRQNSTPAD FLSGSGAGTD GYFSNFGIPA NYDYLPPNVD  120
ISPASKRSRE IEAQFSSQMK EEQMSGGVSG MMDINMDKLL EDSVPCRVRA KRGCATHPRS  180
IAERVRRTRI SDRIRRLQEL VPNMDKQTNT ADMLEEAVEY VKALQSKIQE LTEQQRRCIC  240
KPKEEQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.87960.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153299001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117911e-179AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAY0937941e-179AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013599939.10.0PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-140BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A0D3DKJ60.0A0A0D3DKJ6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G2J10.0A0A3P6G2J1_BRAOL; Uncharacterized protein
STRINGBo8g026850.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-127bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]