PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00153173001
Common NameGSBRNA2T00153173001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 162aa    MW: 17690.9 Da    PI: 10.7312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00153173001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1978132155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIr+ +  +g r  r++lg+f taeeAa a+++a+ +l g
  GSBRNA2T00153173001  78 KKFRGVRQRP-WGKWAAEIRCGKArDG-RpVRVWLGTFETAEEAALAYDKAAVQLIG 132
                          59********.**********655565.78**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381235.2E-401161IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000189.24E-2578139No hitNo description
SuperFamilySSF541712.88E-1979140IPR016177DNA-binding domain
SMARTSM003801.3E-2979146IPR001471AP2/ERF domain
PfamPF008475.6E-1379132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2779139IPR001471AP2/ERF domain
PROSITE profilePS5103221.78679140IPR001471AP2/ERF domain
PRINTSPR003671.1E-118091IPR001471AP2/ERF domain
PRINTSPR003671.1E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKRIVRISFT DAEATDSSSS EDDEQTNTES PPSRRRGKRC VNEIVIDPTD SAGKNNRDRG  60
GKTRFKIRIP ARLQKKNKKF RGVRQRPWGK WAAEIRCGKA RDGRPVRVWL GTFETAEEAA  120
LAYDKAAVQL IGPDAVTNFG GLKVVSKAAK EGSDAGTSAE A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1976139262ATERF1
3gcc_A1e-1976139262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00153173001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602704.11e-113PREDICTED: ethylene-responsive transcription factor ERF069-like
SwissprotQ9C9954e-56ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A0D3DR001e-112A0A0D3DR00_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FVU71e-112A0A3P6FVU7_BRAOL; Uncharacterized protein
STRINGBo8g071630.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]