PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00152277001
Common NameGSBRNA2T00152277001, LOC106364199, LOC106385050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 194aa    MW: 22624.2 Da    PI: 4.4124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00152277001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41e-30171381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+P de+lv eyL+kkv + ++++   ++e++ ++v+PwdL      +++e+y+F+k+++ +    +k r t sgyW++  + +
  GSBRNA2T00152277001  17 LPPGFRFDPDDEDLVFEYLAKKVLHGPMDF--DLPELRSCNVDPWDLL---GDKNTEMYYFVKKEEIE----KKGRETLSGYWEECEE-E 96 
                          79*************************999..49*************6...55778*******99876....6789999*****8866.6 PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ev+++     ++l g kkt++fy g++p+g+ t W+m e+rl
  GSBRNA2T00152277001  97 EVMESgdrgCNHLEGRKKTFAFYIGKRPRGTITPWIMYEFRL 138
                          6777657666677***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-336166IPR003441NAC domain
PROSITE profilePS5100532.43417167IPR003441NAC domain
PfamPF023658.1E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HGPMDFDLPE LRSCNVDPWD  60
LLGDKNTEMY YFVKKEEIEK KGRETLSGYW EECEEEEVME SGDRGCNHLE GRKKTFAFYI  120
GKRPRGTITP WIMYEFRLLS SRATRWSSSS LPRGAVENWR AVKVIVKEEN EEEIEEEEQA  180
SDESDGEEVV QSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-181513915143NO APICAL MERISTEM PROTEIN
1ut4_B5e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_A5e-181513915143NO APICAL MERISTEM PROTEIN
1ut7_B5e-181513915143NO APICAL MERISTEM PROTEIN
4dul_A5e-181513915143NAC domain-containing protein 19
4dul_B5e-181513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00152277001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747650.0KF974765.1 Brassica napus NAC transcription factor 97-1 (NAC97-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610161.11e-141PREDICTED: NAC domain-containing protein 41
RefseqXP_013659277.11e-141NAC domain-containing protein 41-like
RefseqXP_013680453.11e-141NAC domain-containing protein 41-like
RefseqXP_022569947.11e-141NAC domain-containing protein 41-like
TrEMBLA0A0D3E9S11e-139A0A0D3E9S1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E8161e-139A0A3P6E816_BRAOL; Uncharacterized protein
STRINGBo9g097190.11e-140(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.12e-89NAC domain containing protein 97
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]