PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00151336001 | ||||||||
Common Name | GSBRNA2T00151336001, LOC106359529, LOC106444317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 244aa MW: 27560.3 Da PI: 10.3013 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 92.7 | 3.2e-29 | 51 | 106 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC+kNhAa +Ggh+vDGC+Efmp geegt+ alkCaAC+CHR+FHR+ev GSBRNA2T00151336001 51 QAAKYEECQKNHAALTGGHVVDGCCEFMPG-GEEGTSGALKCAACNCHRSFHRKEVY 106 5689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.9E-27 | 53 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-25 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-22 | 54 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 24.976 | 55 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.95E-17 | 162 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-25 | 167 | 234 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.633 | 171 | 235 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 5.5E-24 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MEHGGNCNAI TSTTITLKAK PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK 60 NHAALTGGHV VDGCCEFMPG GEEGTSGALK CAACNCHRSF HRKEVYGHRN STQEELISPT 120 FYRSSNSYKA IQPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI 180 NEGQKKKMKE FAERLGWSIQ KKDEEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNGNICD 240 LQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-16 | 174 | 229 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 186 | KKRVRTKINEGQKKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00151336001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189189 | 0.0 | AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013654665.1 | 0.0 | zinc-finger homeodomain protein 7-like isoform X1 | ||||
Refseq | XP_013741258.1 | 0.0 | zinc-finger homeodomain protein 7-like isoform X1 | ||||
Swissprot | Q9SVL0 | 1e-121 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A398A4T8 | 0.0 | A0A398A4T8_BRACM; Uncharacterized protein | ||||
STRING | Bo7g100590.1 | 1e-174 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13854 | 15 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 1e-113 | homeobox protein 28 |
Link Out ? help Back to Top | |
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Entrez Gene | 106359529 | 106444317 |
Publications ? help Back to Top | |||
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