PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00151336001
Common NameGSBRNA2T00151336001, LOC106359529, LOC106444317
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 244aa    MW: 27560.3 Da    PI: 10.3013
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00151336001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.73.2e-2951106258
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          ++++Y+eC+kNhAa +Ggh+vDGC+Efmp  geegt+ alkCaAC+CHR+FHR+ev 
  GSBRNA2T00151336001  51 QAAKYEECQKNHAALTGGHVVDGCCEFMPG-GEEGTSGALKCAACNCHRSFHRKEVY 106
                          5689*************************9.999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2753105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2554105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2254105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.97655104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.95E-17162234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-25167234IPR009057Homeodomain-like
PROSITE profilePS500718.633171235IPR001356Homeobox domain
TIGRFAMsTIGR015655.5E-24173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEHGGNCNAI TSTTITLKAK PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK  60
NHAALTGGHV VDGCCEFMPG GEEGTSGALK CAACNCHRSF HRKEVYGHRN STQEELISPT  120
FYRSSNSYKA IQPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI  180
NEGQKKKMKE FAERLGWSIQ KKDEEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNGNICD  240
LQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-161742291873ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172186KKRVRTKINEGQKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00151336001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1891890.0AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013654665.10.0zinc-finger homeodomain protein 7-like isoform X1
RefseqXP_013741258.10.0zinc-finger homeodomain protein 7-like isoform X1
SwissprotQ9SVL01e-121ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A398A4T80.0A0A398A4T8_BRACM; Uncharacterized protein
STRINGBo7g100590.11e-174(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-113homeobox protein 28
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]