PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00151336001

Common Name

GSBRNA2T00151336001, LOC106359529, LOC106444317

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 244aa MW: 27560.3 Da PI: 10.3013

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00151336001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.7	3.2e-29	51	106	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++++Y+eC+kNhAa +Ggh+vDGC+Efmp geegt+ alkCaAC+CHR+FHR+ev GSBRNA2T00151336001 51 QAAKYEECQKNHAALTGGHVVDGCCEFMPG-GEEGTSGALKCAACNCHRSFHRKEVY 106 5689***********************9.999******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.9E-27	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-25	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-22	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.976	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.95E-17	162	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.6E-25	167	234	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.633	171	235	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	5.5E-24	173	230	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MEHGGNCNAI TSTTITLKAK PNTNPDPKTK PGSDSFLIKK ENQKPRTRSN QAAKYEECQK 60 NHAALTGGHV VDGCCEFMPG GEEGTSGALK CAACNCHRSF HRKEVYGHRN STQEELISPT 120 FYRSSNSYKA IQPRGVYPTG EIGRRTSSSS EDMKKILNQN SDGKGLMMIT RKKKRVRTKI 180 NEGQKKKMKE FAERLGWSIQ KKDEEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNGNICD 240 LQN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-16	174	229	18	73	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	186	KKRVRTKINEGQKKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00151336001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189189	0.0	AC189189.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002E24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013654665.1	0.0	zinc-finger homeodomain protein 7-like isoform X1
Refseq	XP_013741258.1	0.0	zinc-finger homeodomain protein 7-like isoform X1
Swissprot	Q9SVL0	1e-121	ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBL	A0A398A4T8	0.0	A0A398A4T8_BRACM; Uncharacterized protein
STRING	Bo7g100590.1	1e-174	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13854	15	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50890.1	1e-113	homeobox protein 28

Link Out ? help Back to Top
Entrez Gene	106359529 \| 106444317

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]