PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149075001
Common NameGSBRNA2T00149075001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 333aa    MW: 36571.7 Da    PI: 6.5149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149075001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09189236455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  GSBRNA2T00149075001 189 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 236
                          8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15183254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.83E-9183240No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15185253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-6189236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDLSGRFGAR SGDGVPFREA TALESLHLGG GGEEFRQMVP PENAGGFTAL LELPPTQAVE  60
LLHSSSSSAS QATTLHSLGT LSFPSNPLLM ERASRFSVIA TENQQNGNVS GETTTTSSVP  120
SNEHIKTEPA ETETCDQAAV EKQSNRCGKR KELDKKVKSS TKKKSKSSEE NEKLPYVHVR  180
ARRGQATDSH SLAERARREK INARMKLLQE LVPGCDKIQG TALVLDEIIN HVQSLQRQVE  240
MLSMRLASVN PRIDFNLDTI LASENGSLMD GSFSEQSYHH RQLQQPPSQQ WPFDGLNQPV  300
WGREENQDHG NDHNNLMVGS ASLHPNQVKM EL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149075001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894690.0AC189469.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB078G17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013678349.10.0transcription factor bHLH60-like
RefseqXP_013735049.10.0transcription factor bHLH60-like
SwissprotQ3EAI11e-155BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A397ZL190.0A0A397ZL19_BRACM; Uncharacterized protein
STRINGBra014603.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-142bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]