PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00148140001
Common NameGSBRNA2T00148140001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 282aa    MW: 31188.9 Da    PI: 8.3308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00148140001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.2e-19199233135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++C ttkTp+WR+gp g+ktLCnaCG+++r+ +l
  GSBRNA2T00148140001 199 CTHCETTKTPQWREGPGGPKTLCNACGVRFRSGRL 233
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.98E-15193255No hitNo description
SMARTSM004012.4E-19193247IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.886193229IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.8E-15197230IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.42E-17198247No hitNo description
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17199233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MNNGSWLPEE DFKGLTDNFF DDLINHIDFP LEDIETTNEE GDWGADFKNL IPPPSDVLTS  60
LSSEFTRGGT NGNGQRVGAQ KKPVPTLKQE SGISSTVDTS LPDVKVSKLF QSSSPVSVLE  120
NAAANGSAAS FQNQNRAQRR AFPVKGIRSK RKRPTIPTFM SLHSFLSEML EKKLAMLDDD  180
SGSEDTYNLS SENGTVRKCT HCETTKTPQW REGPGGPKTL CNACGVRFRS GRLLPEYRPA  240
SSPTFIPTVH SNSHRKIIEM RRKEEEGQFV TGMPRGFRYR G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.113140.0microspore
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00148140001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630850.10.0PREDICTED: putative GATA transcription factor 13
RefseqXP_013692534.10.0putative GATA transcription factor 13
SwissprotQ6DBP81e-94GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3BU680.0A0A0D3BU68_BRAOL; Uncharacterized protein
STRINGBo4g071630.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28340.12e-91GATA transcription factor 13
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]