PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146197001
Common NameGSBRNA2T00146197001, LOC106407501
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 281aa    MW: 30096.4 Da    PI: 5.4522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146197001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11163209555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  GSBRNA2T00146197001 163 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 209
                          999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.76E-10156213No hitNo description
SuperFamilySSF474595.76E-17156223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-17159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10164214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDPPLVNDSS FSPANPSSYT LSEIWPFPVN DAVRSGLRLA VNSTPSDKDV STAAAAAAAA  60
EESTVTDLTA GWGGRKARAL NSEEDESSKM VSLSSSGNEV KDSGDKKRKL CGSESGNGDG  120
SMKPEGETSS GGGSKATEQK NKPEPPKDYI HVRARRGQAT DRHSLAERAR REKISEKMTA  180
LQDIIPGCNK IIGKALVLDE IINYIQSLQR QVEFLSMKLE VVNSGPSGGP TIGVFPTGDL  240
GTLPIDLHRN IYEQQEANES RGSHPEWLHM QVDGSFNRTT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146197001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013703824.10.0transcription factor bHLH79
SwissprotQ9LV171e-166BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A078FUW60.0A0A078FUW6_BRANA; BnaA09g06160D protein
TrEMBLA0A397XWQ60.0A0A397XWQ6_BRACM; Uncharacterized protein
STRINGBra035888.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-166bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]