PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144548001
Common NameGSBRNA2T00144548001, LOC106352346
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 93aa    MW: 10716.1 Da    PI: 9.332
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144548001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-0719591554
                         HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         +i +  ++Lr+ lP+ + + +s K+s + +L+++++YI++L
  GSBRNA2T00144548001 19 QIIDLVSKLRQFLPEiRERRRSDKVSASKVLQETCNYIRKL 59
                         5667779********999*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.87459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-61964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-41959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-62076IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSNRRSRQSS SATRISDDQI IDLVSKLRQF LPEIRERRRS DKVSASKVLQ ETCNYIRKLH  60
REVDNISDRL SLLLDSVDED SQEAAVIRNL LM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144548001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0246404e-95BT024640.1 Arabidopsis thaliana unknown protein (At3g28857) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151837.19e-58PREDICTED: transcription factor PRE5-like
RefseqXP_013647451.19e-58transcription factor PRE5
SwissprotQ9LJX18e-53PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A397ZCF82e-56A0A397ZCF8_BRACM; Uncharacterized protein
TrEMBLM4E9A22e-56M4E9A2_BRARP; Uncharacterized protein
STRINGBra025358.1-P3e-57(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-43bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]