PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141897001
Common NameGSBRNA2T00141897001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 289aa    MW: 33141.7 Da    PI: 4.7625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141897001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.3e-07163208555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  GSBRNA2T00141897001 163 QSMAARERRRRIAEKTHELTKLVPGG-----QKLNTAEMFQAAAKYVKFLQ 208
                          567889******************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-11156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.824158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-10161217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-5163208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.09E-4180211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSSMDCLSNF FTWDPPIQLQ DCFMPDMDMI IPETDSFFFQ SQPQMQFHQP FVQEEAPSQT  60
FLELTDFDSF SDQFLPPQET YPPYPKAETF DEIHYLDSFL PTPKRQKLVN SSYHCNTHFP  120
NPNLDIVQQA SVFPEFRVHD FPLVFKAGLG DQDGAKKPKL SSQSMAARER RRRIAEKTHE  180
LTKLVPGGQK LNTAEMFQAA AKYVKFLQSQ IGILQMMQTT KKTQGITDVE IETQILLESQ  240
AVQEKLSTKE VCLVPCEIVR DLTSEESIWR NPKISREIDK LLSTDLAN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141897001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896550.0AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740501.20.0transcription factor bHLH53-like
SwissprotQ84RD01e-136BH053_ARATH; Transcription factor bHLH53
TrEMBLM4E2J20.0M4E2J2_BRARP; Uncharacterized protein
STRINGBra022993.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-122bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]