PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00137730001 | ||||||||
Common Name | GSBRNA2T00137730001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 433aa MW: 48203.6 Da PI: 5.93 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.5 | 2.3e-31 | 234 | 288 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl GSBRNA2T00137730001 234 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 288 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-29 | 233 | 289 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 234 | 289 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.5E-24 | 234 | 289 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-8 | 236 | 287 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.5E-22 | 324 | 371 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MNRHRLVSTA QDECNKGLHQ PCSSSLSPVH NFLNLQPENR NSPFIRSHSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SESQKHLGNT LPFLPDPSTN SQPPSAVESA RSPSIFSEDM 120 SNPFDGDNTL VKDFFNLSGD ACSDGAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDEIYE TPLASSSNPV TGLSQTQRSL SGAMTIEAVS SHPSPGSAAA SNLKPRMRWT 240 PELHESFLKS VDKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK HIPEKKEERK 300 SVNTEGKKLA LSNGEAGERK KGAMQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY 360 LEKMLEEQRK TGMLMSSSSS QTSDCQNMSK TEVSSLSQPK NIASETEDDK CESPQKRRKV 420 ENNTESEDPP ER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-23 | 234 | 291 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.22998 | 1e-31 | leaf| root| vegetative meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00137730001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013686413.1 | 0.0 | myb family transcription factor PHL6-like isoform X1 | ||||
Refseq | XP_022572100.1 | 0.0 | myb family transcription factor PHL6-like isoform X1 | ||||
Refseq | XP_022572101.1 | 0.0 | myb family transcription factor PHL6-like isoform X1 | ||||
Swissprot | Q949U2 | 0.0 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A3P6A3G2 | 0.0 | A0A3P6A3G2_BRACM; Uncharacterized protein | ||||
STRING | Bo3g065290.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6786 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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