PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00137481001 | ||||||||
Common Name | GSBRNA2T00137481001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 151aa MW: 16969.7 Da PI: 7.0031 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.2 | 7.4e-13 | 79 | 138 | 2 | 61 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ke + +r+ +NR++A+ R+RKk ++ Le ++ eL++ N++L +++++l +e l++ GSBRNA2T00137481001 79 KEYRSLKRLLRNRVSAQQARERKKVYVSDLESRANELQNNNEQLEEKISTLMNENTMLRK 138 778889***********************************************9987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-12 | 77 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-12 | 79 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.53 | 80 | 143 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.13E-13 | 82 | 140 | No hit | No description |
CDD | cd14704 | 6.34E-14 | 84 | 133 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.5E-17 | 84 | 141 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 85 | 100 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MSLQRPNGNS SSSSSPKKRT TEESDEELLM VPDMEAAGST GVLSSSADDG VNNPEIEVEQ 60 TQNATSTAKR RRGRNPEDKE YRSLKRLLRN RVSAQQARER KKVYVSDLES RANELQNNNE 120 QLEEKISTLM NENTMLRKML INTRPKADDN * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that promotes photomorphogenesis in light. Acts downstream of the light receptor network and directly affects transcription of light-induced genes. Specifically involved in the blue light specific pathway, suggesting that it participates in transmission of cryptochromes (CRY1 and CRY2) signals to downstream responses. In darkness, its degradation prevents the activation of light-induced genes. {ECO:0000269|PubMed:12023303}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00137481001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009135537.1 | 1e-103 | PREDICTED: transcription factor HY5-like | ||||
Swissprot | Q8W191 | 3e-85 | HYH_ARATH; Transcription factor HY5-like | ||||
TrEMBL | A0A398A953 | 1e-102 | A0A398A953_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CBU1 | 1e-102 | M4CBU1_BRARP; Uncharacterized protein | ||||
STRING | Bra001671.1-P | 1e-103 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10266 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G17609.2 | 2e-76 | HY5-homolog |