PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132972001
Common NameGSBRNA2T00132972001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 870aa    MW: 96816 Da    PI: 5.9497
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132972001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.73e-42113190178
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          +Cqve+Ceadls++k+yhrrhkvCe+hska+++lv+g++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  GSBRNA2T00132972001 113 VCQVESCEADLSKVKDYHRRHKVCEMHSKATSALVAGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKTNP 190
                          6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-34106175IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.488111188IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-39113192IPR004333Transcription factor, SBP-box
PfamPF031109.1E-31114187IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.5E-7655761IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.29E-7657761IPR020683Ankyrin repeat-containing domain
CDDcd002043.08E-8660758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MEARVEGEGQ HFYGYRGKRS VEWDLNDWKW DGDLFIATPL NPGFFPLGNS SNSSSSCSEE  60
GNGNVTREVE KRRRAAAAAA TGEDGNNNGG LSLKLGENGY DLNGGSGTNH RSVCQVESCE  120
ADLSKVKDYH RRHKVCEMHS KATSALVAGI MQRFCQQCSR FHVLEEFDEG KRSCRRRLAG  180
HNKRRRKTNP EPAANGNPLS DDNQSSNYLL ICLLKILSNM HSANGSSDHP DLMPHLLKSL  240
VSHAGEQLGK NLVELLLQGG SGLLAAPQED SKQAPEIPRQ ELYANGNRSE KLQTKVNDFD  300
LNDIYIDSDD GTDLERSSPP TTTTNPATSS PDYPSWIHQT SRNSDSASDQ SPSSSSEDAQ  360
MRTGRIVFKL FGKEPNDFPP VLRGQILDWL SHTPTDIESY IRPGCIVLTI YLRQAETAWE  420
ELSDDMGLSL SKLLDLSDDP LWTSGWIYVR MQNQYAFVFD GQVVVDTSLP LRSYDHSHII  480
SVRPLAVAAT GKAQFTVKGI NLRRPGTRLL CAVEGKYLIQ ENDDLKESNE CVSFSCDLPI  540
TSGRGFMEIE DQGGLSSSFF PFIVVEEDDV CSEIRILETT LEFTDTDSAK LAMEFIHELG  600
WLLRRSKLGV FSLARFKWLI EFSMDREWCA VIRKLLNMFF EGAVGDSSSD AAALSELCLL  660
HRAVRKNSKP MVEMLLRYVV PNQQRIHSLF RPDDAGPAGL TPLHIAAGKD GSEDVLDALT  720
EDPSMVGIEA WRTSRDTTGF TPEDYARLRG HFSYIHLIQR KINKKSATED HVVVNIPASS  780
ISDREQKETK SGSSALEITH GNNKLQCKLC DHKLVYGTAR RSVAYRPAML SMVAIAAVCV  840
CVALLFKSCP EVLYVFQPFR WELLDYGTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-33104187184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.219070.0leaf| microspore-derived embryo| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00603PBMTransfer from AT2G47070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132972001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747561.10.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_013747563.10.0squamosa promoter-binding-like protein 1 isoform X1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A397Z5G50.0A0A397Z5G5_BRACM; Uncharacterized protein
STRINGBra041037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30302764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]