PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132877001
Common NameGSBRNA2T00132877001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 444aa    MW: 48073.8 Da    PI: 10.166
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132877001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.81e-22325385161
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN+aL++el++l++++ +l+ 
  GSBRNA2T00132877001 325 ERELKRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSNNLRG 385
                          89*****************************************************999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.7E-3165160IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-14194295No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-19319385No hitNo description
PfamPF001706.0E-21325387IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-21325389IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.346327390IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-11328384No hitNo description
CDDcd147021.22E-22330381No hitNo description
PROSITE patternPS000360332347IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MPIFNWRGLF LVRWIVSNIP AVGFEAVVGI VGPNVFFFSR FVSLSSGYRF LQRQLLLKCG  60
NVKTMGKSEE PKVTKSDNKP SSPPADQTNV HVYPDWAAMQ AYYGPRVAMP PYYNSAMAAA  120
SGHPPPPYMW NPQHMMSPYG TPYAAVYPHG GGVYAHPGFP MGSQPQGQKG ATPLTTPGTP  180
LNIDTPSKST GNTENGLMKK LKEFDGLAMS LGNGNNGDEG KRSRNSSETD GSSDGSDGNT  240
TGADEPKLKR SREGTPAKDE KKHLVQSSSF RSVSQSSGDN NCVKPSVQGG GGAIVSAAGV  300
SANSNPTFMS QSLAMVPPET WLQNERELKR ERRKQSNRES ARRSRLRKQA ETEELARKVE  360
ALTAENMALR SELNQLNEKS NNLRGANATL LDKLKSSEPE KRVKSSGNGD DKNKKQGDNE  420
TNSTSKLHQL LDTKPRADGV AAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341347RRSRLRK
2341348RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21350.0leaf| microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269|PubMed:8672884}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132877001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU271080.0U27108.1 Brassica napus transcription factor (BnGBF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747887.10.0G-box-binding factor 3 isoform X1
RefseqXP_022574719.10.0G-box-binding factor 3 isoform X1
SwissprotP427760.0GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A3P5Z0P70.0A0A3P5Z0P7_BRACM; Uncharacterized protein
STRINGBra004550.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-177G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  4. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]