PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00132722001 | ||||||||
Common Name | GSBRNA2T00132722001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 474aa MW: 52619.7 Da PI: 5.6081 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 413 | 5.5e-127 | 222 | 435 | 2 | 215 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 ppsaflgpkcalwdctrpa+gs+w+ dycs +h +lal e++pgt+pvlrp+gi+lkd+ll++al+ak+ gk+vgip+cega+++k+pwn GSBRNA2T00132722001 222 PPSAFLGPKCALWDCTRPAHGSDWYMDYCSDYHGNLALTEDSPGTAPVLRPGGISLKDNLLIDALRAKTLGKNVGIPVCEGAVNTKCPWN 311 7***************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldala 181 aaelf+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+da+a GSBRNA2T00132722001 312 AAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACA 401 ****************************************************************************************** PP VOZ 182 lyrlelklvdekksakgkvskdsladlqkklgrl 215 lyrlelkl+++kks+kgkv+kd+ladl+kk+ ++ GSBRNA2T00132722001 402 LYRLELKLTNGKKSPKGKVAKDPLADLEKKMEKM 435 *****************************99876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MSNHPKITCV SSSHQNLVEK LMQLQERFSH LQAARKEGRV NDHAVLEAQI SQNLREWQAE 60 LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSFK EHTVPKADAF DQGLCSPGQL 120 EWAAEPFDQS SFDVNFLSGF EDAVNNSGTH DQQLHCAFQE FDPSLSTAPD FHGQKLSHLD 180 ITSQLDYHLS EVRQEFNNGT PSVKLDVPDE SEFTTPPSVR VPPSAFLGPK CALWDCTRPA 240 HGSDWYMDYC SDYHGNLALT EDSPGTAPVL RPGGISLKDN LLIDALRAKT LGKNVGIPVC 300 EGAVNTKCPW NAAELFHLEL VEGETIREWL FFDKPRRAYD SGNRKQRSLP DYSGRGWHES 360 RKQLMKEQEG QKRSYYMDPQ PPGPFEWHLF EYQINESDAC ALYRLELKLT NGKKSPKGKV 420 AKDPLADLEK KMEKMGKLTP EAASDKPSPT TKSRAKATKG AKAAATGNLT QAT* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles and mesophyll cells of various tissues. Expressed in the root, especially in the root tip. Also detected in stamen filaments, stipules and anthers. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00132722001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. | |||
GenBank | AC189220 | 0.0 | AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142834.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A3P5ZA03 | 0.0 | A0A3P5ZA03_BRACM; Uncharacterized protein | ||||
STRING | Bra004691.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|