PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00132470001 | ||||||||
Common Name | GSBRNA2T00132470001, LOC106388118, LOC106388119 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 369aa MW: 40513.9 Da PI: 9.011 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.6 | 2.9e-25 | 137 | 181 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v +g+k+CErH+hrgr+rsrk++e+ GSBRNA2T00132470001 137 DPEPGRCRRTDGKKWRCSRDVFAGHKYCERHVHRGRNRSRKPVET 181 79****************************************996 PP | |||||||
2 | QLQ | 53.8 | 6e-19 | 72 | 108 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k GSBRNA2T00132470001 72 SFFSWAQWQELELQALIYRYMLAGAAVPQELLLPIKK 108 67*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.3E-12 | 72 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.247 | 73 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.3E-13 | 74 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.279 | 137 | 181 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.6E-21 | 138 | 180 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDLQLKQWRS QQVQTESEPQ PSAAKIPRHA FDPIQSQTAT STVLPLFAPE PASSKLSSLC 60 PDSSSRFSKM GSFFSWAQWQ ELELQALIYR YMLAGAAVPQ ELLLPIKKSL LHLSPSYFLQ 120 HLPHYQPAWY LGRGAMDPEP GRCRRTDGKK WRCSRDVFAG HKYCERHVHR GRNRSRKPVE 180 TPTVNATTTT SMAAPPTAAP SSTPSAFAFG GGQEVGQRGS SSFFFSSQSC SEMKQERNNN 240 KRPYESHNGF GSNGSDGGHI LRHFFDDWPR SEADNSSSPM SSATCLSISM PGNSSSDVSL 300 KLSTGNEEEA RSNNIGRDQQ NMSWWSGGGT NHNHHHMGGP LAEALRSSSS SSPTSVLHQL 360 GVSTQAFH* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00132470001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117417 | 1e-177 | AK117417.1 Arabidopsis thaliana At2g36400 mRNA for unknown protein, complete cds, clone: RAFL17-02-B13. | |||
GenBank | AY102636 | 1e-177 | AY102636.1 Arabidopsis thaliana transcription activator (GRF3) mRNA, complete cds. | |||
GenBank | BT026472 | 1e-177 | BT026472.1 Arabidopsis thaliana At2g36400 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013683568.1 | 0.0 | growth-regulating factor 3-like isoform X1 | ||||
Refseq | XP_013683569.1 | 0.0 | growth-regulating factor 3-like | ||||
Refseq | XP_022554772.1 | 0.0 | growth-regulating factor 3-like isoform X2 | ||||
Swissprot | Q9SJR5 | 0.0 | GRF3_ARATH; Growth-regulating factor 3 | ||||
TrEMBL | A0A3N6RMT7 | 0.0 | A0A3N6RMT7_BRACR; Uncharacterized protein | ||||
STRING | Bra023066.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-106 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 106388118 | 106388119 |