PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00132352001
Common NameGSBRNA2T00132352001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 296aa    MW: 34019.9 Da    PI: 5.6517
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00132352001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-07165210555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  GSBRNA2T00132352001 165 QSMAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 210
                          567889******************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.03E-11158220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.728160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-10163230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-5165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.51E-4182213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSSTDCLSHF FNWDPPIQLR DCFIPDMDMI TPETDSLFFQ SQPPMQFHQP LFQEEAPSQN  60
LIELTDLDSF CDQFLPLQET YLPYPKAEIF DETYNFDSFL PTPKRQKIVN SSYHCNTHTH  120
FPNSNLDFLP EASVFPEFRV PDFPLVFKAG LGDQDGAKKP KLSSQSMAAR ERRRRIAEKT  180
HELTKLIPGG QKLNTAEMFQ AAAKYVKFLQ SQVGILQMMQ TTKKAITSLQ KQHYKLIETL  240
IFLLESQAVQ EKLSTKELCL VPSEMVRDLT SEESIWRNPK ISREINKLLS TDLAN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00132352001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896550.0AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553878.10.0transcription factor bHLH53-like
SwissprotQ84RD01e-137BH053_ARATH; Transcription factor bHLH53
TrEMBLA0A3P6A9N90.0A0A3P6A9N9_BRAOL; Uncharacterized protein
STRINGBo3g028090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]