PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131559001
Common NameGSBRNA2T00131559001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 101aa    MW: 11982.5 Da    PI: 9.6569
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131559001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof77.41.8e-242259643
               zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkG 43
                         + cprC+s+ntkfCyynnys+sqPry Ck+Crr+Wt G
  GSBRNA2T00131559001 22 RVCPRCNSRNTKFCYYNNYSVSQPRYKCKNCRRHWTDG 59
                         67**********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-132059IPR003851Zinc finger, Dof-type
PfamPF027013.8E-222259IPR003851Zinc finger, Dof-type
PROSITE profilePS5088420.1882277IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MENLNVCVKG HTQLNEEKLP LRVCPRCNSR NTKFCYYNNY SVSQPRYKCK NCRRHWTDGH  60
GRIWGQPNET LTSRTQRDQP FVEIQQVNHH QPFSHVQKIQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131559001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137161.15e-34PREDICTED: dof zinc finger protein DOF4.4-like
RefseqXP_013741408.14e-34dof zinc finger protein DOF4.4-like
SwissprotQ9SUA91e-19DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A3P5Z3P02e-61A0A3P5Z3P0_BRACM; Uncharacterized protein
STRINGBo1g023790.12e-47(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.14e-22Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]