PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00131555001
Common NameGSBRNA2T00131555001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 242aa    MW: 27439.3 Da    PI: 8.9487
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00131555001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof102.52.5e-322177561
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          + cprC s+ntkfC+ynny ++qPry C++Crr+Wt+GGalr+vP+Gg +rk k+ 
  GSBRNA2T00131555001 21 PRVCPRCSSDNTKFCFYNNYRVTQPRYNCRNCRRFWTHGGALRDVPIGGRARKIKHI 77
                         678**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-211676IPR003851Zinc finger, Dof-type
PfamPF027012.6E-292276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.8722276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDNSNVVVRG NRQVNEEKPP PRVCPRCSSD NTKFCFYNNY RVTQPRYNCR NCRRFWTHGG  60
ALRDVPIGGR ARKIKHIDQP SVSQVVPDEI QQVNHHQPFS HVQETTQFLE PFGGSSSSAV  120
VGNHFSSLPE THGDMMLPTR SIPPMDLFDG LFHQGYYGAG LNNFVGNHLM NQSIGGHVDN  180
YNSYRVNQEN PNMRNQSFTN TMIMNHNAGT SERRGYPGID HMINNNNNNN NNKSVFRSSY  240
H*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00131555001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134220.11e-178PREDICTED: dof zinc finger protein DOF4.4-like isoform X1
SwissprotQ9SUA99e-64DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A398ARP31e-177A0A398ARP3_BRACM; Uncharacterized protein
TrEMBLM4DAI21e-177M4DAI2_BRARP; Uncharacterized protein
STRINGBra013492.1-P1e-178(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-66Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]