PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130941001 | ||||||||
Common Name | GSBRNA2T00130941001, LOC106354258 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 258aa MW: 27690.8 Da PI: 5.1854 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 138 | 159 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+ F ++ H+r+H GSBRNA2T00130941001 138 VCNVCGRAFHSWKAVFGHLRSH 159 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.663 | 137 | 164 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 139 | 159 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MTNPEKMKVD GDTEKEREDS SSDEQWSDEE SAMREIVLGL PALSISSATF GVSIADDEEE 60 EARLNEQAVV AAELVIAAAE EAVMKEKSDG KKKVRRQRKT MKLNNDDEAG GSSKGGEAAK 120 KPRKKTSEFT NLPRGPPVCN VCGRAFHSWK AVFGHLRSHK DRSYRGFLPP PRFAAPIRGV 180 MIPGPNSAFV RVVARGGSSG GGGGASGGEG GRGVGIVMDV DRVEEEKQEV TESGSVAKFD 240 LNKSPPKDDD EEEEKTK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130941001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592252.1 | 0.0 | PREDICTED: zinc finger protein ZAT9 | ||||
Refseq | XP_013649612.2 | 0.0 | uncharacterized protein LOC106354258 | ||||
TrEMBL | A0A0D3A1Q6 | 0.0 | A0A0D3A1Q6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ESB1 | 0.0 | A0A3P6ESB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006320.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 6e-40 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106354258 |
Publications ? help Back to Top | |||
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