PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00128434001 | ||||||||
Common Name | GSBRNA2T00128434001, LOC106357898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 32311.1 Da PI: 4.5821 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 4e-10 | 136 | 183 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE++RR+ +N++f L + l + + +K +K +iL A++ +++L GSBRNA2T00128434001 136 TKACREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAILDDAIRVVNQL 183 6789**********************9...9****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.89E-12 | 125 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.61E-8 | 132 | 184 | No hit | No description |
PROSITE profile | PS50888 | 12.335 | 132 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-7 | 136 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-8 | 138 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-11 | 139 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MYQSNEEDDD FLAALCFDQS NGGEDPYAFI QTEQGNLFPD FGSSSGVNLQ TEQEQEQVCN 60 NNNIGAQFDS FSGNNGLGPF GGVLYSSSIV EKEQELVCCG VVEINSSSSV GGVKEELEDE 120 CSRKRGRTGP CSKPGTKACR EKKRREMLND KFMDLSSFLE PTRTPKTDKP AILDDAIRVV 180 NQLRGEAHEL KETNQKLLEE IKTLKAEKNE LREEKLVLKA DKEKMEQQLK SMAAVPSPGF 240 MPSHPAAFHQ NKMAVYASYG YYPNMPMMPY LLPPSQRDTS QDQQNCSFAA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 144 | RKRGRTGPCSKPGTKACREKKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.13271 | 0.0 | microspore |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00128434001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013653071.1 | 0.0 | transcription factor bHLH34 | ||||
Swissprot | Q9LTC7 | 1e-125 | BH034_ARATH; Transcription factor bHLH34 | ||||
TrEMBL | M4DEK1 | 0.0 | M4DEK1_BRARP; Uncharacterized protein | ||||
STRING | Bra014923.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4026 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23210.1 | 1e-118 | bHLH family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 106357898 |
Publications ? help Back to Top | |||
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