PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00127521001 | ||||||||
Common Name | GSBRNA2T00127521001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 17717.9 Da PI: 9.744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 95 | 143 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 +++kGVr ++ +g+W AeI+dp r + +lg f tae+Aa+a+++a+ ++ GSBRNA2T00127521001 95 KKHKGVRKKP-SGKWSAEIWDP-----RlkVKRWLGVFPTAEMAARAYDEAAAEI 143 589****999.7*********9.....445777******************9886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.57E-14 | 95 | 151 | No hit | No description |
PROSITE profile | PS51032 | 19.058 | 96 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-20 | 96 | 159 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-20 | 96 | 151 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-14 | 96 | 151 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-8 | 96 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 97 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-6 | 119 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MDYSYNVPSD DQNPVALRPP SSSSSYLTRD QEHQIMVSAL QQVISNVGSD TSSPNGITSG 60 ADLPLPDAGP CPLCGITGCY GCAFQRRDEE TKNEKKHKGV RKKPSGKWSA EIWDPRLKVK 120 RWLGVFPTAE MAARAYDEAA AEISARRGRM NGHGIRRRRR * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 148 | 159 | RMNGHGIRRRRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00127521001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013747053.1 | 2e-99 | putative ethylene-responsive transcription factor ERF121 | ||||
Swissprot | Q38Q40 | 2e-68 | EF122_ARATH; Ethylene-responsive transcription factor ERF122 | ||||
TrEMBL | M4EZK7 | 1e-88 | M4EZK7_BRARP; Uncharacterized protein | ||||
STRING | Bra034250.1-P | 2e-89 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3472 | 15 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67000.1 | 4e-54 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|