PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125430001
Common NameGSBRNA2T00125430001, LOC106347418
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 465aa    MW: 51370.7 Da    PI: 6.0804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125430001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.8e-51161441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgk
  GSBRNA2T00125430001  16 LPVGLRFRPTDEELVRFYLHRKINGHDDDV-TAIREIDICKWEPWDLPgfSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGK 104
                          799************************999.88***************6448888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s k++ +g+k+tLvf++grapkg++t+W+mheyr+
  GSBRNA2T00125430001 105 DRKIKSGKNSIIGVKRTLVFHSGRAPKGTRTNWIMHEYRA 144
                          ******99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5713167IPR003441NAC domain
PROSITE profilePS5100554.65116167IPR003441NAC domain
PfamPF023651.1E-2417143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASTNQNIKV LTLDSLPVGL RFRPTDEELV RFYLHRKING HDDDVTAIRE IDICKWEPWD  60
LPGFSVIKTN DSEWLFFCPL DRKYPNGSRQ NRATIAGYWK ATGKDRKIKS GKNSIIGVKR  120
TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKQDL SLADEDSKLD  180
EAAEQDVLSP TAATSSPGET RSQVSVVVKT EDVKRYDISE SSLLVSSACV EATTAQLGDI  240
DYLAFPELES LNYTMFSPSH SQLQSELGFS LNAFQSGLSD FSGNHSNSSQ VQTQYGTNEV  300
DTYISDFVDS ILDLPDDDAV PEQEGSAPHQ IAYAQHSVGD MSNDVSRTGI IKLQARREQP  360
SGCATDYIVH GSASKRLRLQ SNLEGIKSRS LELQTIKREV EEDRDGEAMK KGKPSKNKTG  420
LLFRKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADFRAA SVMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-4861687166NO APICAL MERISTEM PROTEIN
1ut4_B9e-4861687166NO APICAL MERISTEM PROTEIN
1ut7_A9e-4861687166NO APICAL MERISTEM PROTEIN
1ut7_B9e-4861687166NO APICAL MERISTEM PROTEIN
3swm_A9e-48616810169NAC domain-containing protein 19
3swm_B9e-48616810169NAC domain-containing protein 19
3swm_C9e-48616810169NAC domain-containing protein 19
3swm_D9e-48616810169NAC domain-containing protein 19
3swp_A9e-48616810169NAC domain-containing protein 19
3swp_B9e-48616810169NAC domain-containing protein 19
3swp_C9e-48616810169NAC domain-containing protein 19
3swp_D9e-48616810169NAC domain-containing protein 19
4dul_A9e-4861687166NAC domain-containing protein 19
4dul_B9e-4861687166NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247650.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125430001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413530.0KP641353.1 Brassica napus NAC transcription factor 62-1.1 (NAC62-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013642396.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A078F5250.0A0A078F525_BRANA; BnaA06g15870D protein
TrEMBLA0A397YXU90.0A0A397YXU9_BRACM; Uncharacterized protein
STRINGBra017980.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]