PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123547001
Common NameGSBRNA2T00123547001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 299aa    MW: 33315.9 Da    PI: 10.3787
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123547001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-144993147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  GSBRNA2T00123547001 49 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVVQIRSHAQKY 93
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-174399IPR009057Homeodomain-like
PROSITE profilePS5129415.64498IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-74699IPR009057Homeodomain-like
TIGRFAMsTIGR015578.4E-184796IPR006447Myb domain, plants
SMARTSM007171.3E-114896IPR001005SANT/Myb domain
PfamPF002492.0E-124993IPR001005SANT/Myb domain
CDDcd001673.21E-95194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNARPAPFLD PVSVSFNSTT PVTGRRDTAS LREDTTTKIR KPYTIKKSRE NWTEQEHDKF  60
LEALHLFDRD WKKIEAFVGS KTVVQIRSHA QKYFLKVQKS GANEHLPPPR PKRKARHPYP  120
QKAPKNVSLP SHAIGSIPAS NAPLLQPAYL FSSSDSQSLL GNPASSSSSL NHESTNLPIP  180
AIQEEPGVSA TALPKNRCYS TSNKEVKPNL PAVTTDPNNE ESCEKTRRVM PNFAQVYRFI  240
GSVFDPNTSG HLQRLKQMDP INMETVLLLM RNLSVNLTSP EFAEQRKLIS AYSSKALK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.183190.0flower
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123547001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936685e-91AB493668.1 Arabidopsis thaliana At4g01280 mRNA for hypothetical protein, partial cds, clone: RAAt4g01280.
GenBankAJ9372125e-91AJ937212.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like4 (lcl4 gene).
GenBankAY5195135e-91AY519513.1 Arabidopsis thaliana MYB transcription factor (At4g01280) mRNA, complete cds.
GenBankBT0247115e-91BT024711.1 Arabidopsis thaliana At4g01280 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013608711.10.0PREDICTED: protein REVEILLE 5
SwissprotC0SVG51e-149RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A0D3DZQ10.0A0A0D3DZQ1_BRAOL; Uncharacterized protein
STRINGBo9g003580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12902893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.11e-125MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]