PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00121976001 | ||||||||
Common Name | GSBRNA2T00121976001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 219aa MW: 24384.8 Da PI: 8.2161 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 190 | 212 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L +Hi + H GSBRNA2T00121976001 190 VCPKCSRGFRDPVDLLKHIDKdH 212 7******************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 8.77E-14 | 6 | 49 | No hit | No description |
PROSITE profile | PS51039 | 7.93 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 6.2E-12 | 11 | 50 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.2E-5 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.2E-15 | 13 | 49 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 4.0E-10 | 91 | 146 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 4.06E-10 | 93 | 148 | No hit | No description |
PROSITE profile | PS51039 | 7.889 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.02 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 7.0E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 8.746 | 189 | 217 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVDDCKQ IDFLPFTCDR CTQVFCLDHR SYNNHNCPKG NRGDVTVVIC 60 PLCAKGVRLN PDEDPNITWE KHVSSNCDPS SYEKTVKKKK CPVPRCRELL TFSNTIRCRD 120 CSVEHCLKHR FGPDHGCAGP KKPESRWSTL LASAEASISR LGTDLSQKLQ FANGNSEKMP 180 EKNGKVTVDV CPKCSRGFRD PVDLLKHIDK DHHGTSKA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.25593 | 1e-149 | flower |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00121976001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189457 | 0.0 | AC189457.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073E19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022546911.1 | 1e-161 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like | ||||
Swissprot | Q9SCM4 | 1e-133 | SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 | ||||
TrEMBL | A0A397Y8R7 | 1e-159 | A0A397Y8R7_BRACM; Uncharacterized protein | ||||
STRING | Bo8g091910.1 | 1e-150 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57480.1 | 1e-136 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|