PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00121760001
Common NameGSBRNA2T00121760001, LOC106418302
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 464aa    MW: 51212.7 Da    PI: 6.2582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00121760001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.9e-51161441128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp+G+rF+Ptdeelv++yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgk
  GSBRNA2T00121760001  16 LPVGLRFRPTDEELVSFYLQRKINGHDDDV-TAIREIDICKWEPWDLPgfSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGK 104
                          799************************999.88***************6448888999******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++++s k++ +glk+tLvf++grapkg++t+W+mheyr+
  GSBRNA2T00121760001 105 DRKIKSGKSSIIGLKRTLVFHSGRAPKGTRTNWIMHEYRA 144
                          ******9999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-5711167IPR003441NAC domain
PROSITE profilePS5100555.01216167IPR003441NAC domain
PfamPF023651.2E-2417143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MASMNQNIKV LTLDSLPVGL RFRPTDEELV SFYLQRKING HDDDVTAIRE IDICKWEPWD  60
LPGFSVIKTN DSEWLFFCPL DRKYPNGSRQ NRATIAGYWK ATGKDRKIKS GKSSIIGLKR  120
TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKPEL GLADEDSKLD  180
EAADQDVLSP AGATSSPDET RSHVSVVVKT EDVKRFDIAE SCLVVSGDSR IGACVEATTA  240
QLGDIDDLSF PELESLNYKM FSPSHSQLQS ELGFSLNAFQ SGLSDFSGNH NNSSQVQTQC  300
GTNEVDTYIS DFVDSILDLP DEAVPEQEES APHQIAYAQH SMSNDVSRTG IIKLQARQQQ  360
PSGCATSYMV HGSAAKRLRL QRNLEGIRAK SLELQTIKRE VEDRDGETMK KGKQSQNRTG  420
LLFKKFVSVR CSSGGLLRAA VVAILFLMSV CSLTADVRAS VMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-4761677165NO APICAL MERISTEM PROTEIN
1ut4_B5e-4761677165NO APICAL MERISTEM PROTEIN
1ut7_A5e-4761677165NO APICAL MERISTEM PROTEIN
1ut7_B5e-4761677165NO APICAL MERISTEM PROTEIN
4dul_A5e-4761677165NAC domain-containing protein 19
4dul_B5e-4761677165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247650.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00121760001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413530.0KP641353.1 Brassica napus NAC transcription factor 62-1.1 (NAC62-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013714430.10.0NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A3P6GAP00.0A0A3P6GAP0_BRAOL; Uncharacterized protein
STRINGBo8g077840.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]