PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00120548001

Common Name

GSBRNA2T00120548001, LOC106382489

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 599aa MW: 68537.5 Da PI: 8.4826

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00120548001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.7	8.6e-15	96	177	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt...sessstcpyfdql 85 W+ +evlaL+++r+ +e+++ + We s+k++e g++rsp +Ckek+e+ ++ry + +++ ++++ +++ ++++f+++ GSBRNA2T00120548001 96 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGYKRSPRECKEKFEEEERRYFNSNNNTNDHHisnYNNKGNYRMFSEV 177 ******************998.....9*****************************999888887732223344466666665 PP
2	trihelix	99.6	2.5e-31	450	546	1	86
trihelix 1 rWtkqevlaLiearr.......emeerlr.....rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 rW+++evlaLi++rr +++++ + +++++ plWe++skkm e g++rs+k+Ckekwen+nk++kk+k+ +kkr + +s+t GSBRNA2T00120548001 450 RWPRDEVLALINIRRsissindDDHHKGGislssSSSKAVPLWERISKKMLESGYKRSAKRCKEKWENINKYFKKTKNVNKKR-PLDSRT 538 8************777766533333332222224699***************************************8.9* PP trihelix 79 cpyfdqle 86 cpyf+ql+ GSBRNA2T00120548001 539 CPYFHQLT 546 ****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-10	94	160	No hit	No description
PROSITE profile	PS50090	5.552	95	147	IPR017877	Myb-like domain
Pfam	PF13837	1.2E-19	449	547	No hit	No description
CDD	cd12203	4.35E-24	449	526	No hit	No description
PROSITE profile	PS50090	6.829	450	519	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSRKI 60 IHHHHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE VLALLRFRST VENWFPEFTW 120 ELTSRKLAEV GYKRSPRECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF 180 YHHGHNDDEH VSSEVGDNQN KRNNSLKGKE NVEEMGHNLL EEGKRDHQGQ GQVEESSMGN 240 KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKERF GVLKGFCEGL VRNMIVQQEE 300 MHKKLLEDMV KKEEEKMARE EAWKKQEMER LNKEVEIRAN EQAMASDRNT SIIKFICKFT 360 GHDNHDDGNG MVQSPRPSQD SSSLVLPKTQ GRRKCQTSSS LLPQALTPHN PISLQTNDIP 420 LEPISTETLK TKTQNRKPPL SDEKSDTGKR WPRDEVLALI NIRRSISSIN DDDHHKGGIS 480 LSSSSSKAVP LWERISKKML ESGYKRSAKR CKEKWENINK YFKKTKNVNK KRPLDSRTCP 540 YFHQLTALYS QPTTTATDTS TGELETRVGS GDSVMHVDAN GAGEKSNVQF SGFDLALP*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MFDGGVPEQI DQFIASPQPP PLLPPHQPAT ERSLPFPVSF ASFNSNHQAQ HMLSLDSRKI  60
IHHHHHHGIK DGGVSSEWIG HTDHDGHNHR HFHHPWCSDE VLALLRFRST VENWFPEFTW  120
ELTSRKLAEV GYKRSPRECK EKFEEEERRY FNSNNNTNDH HISNYNNKGN YRMFSEVEEF  180
YHHGHNDDEH VSSEVGDNQN KRNNSLKGKE NVEEMGHNLL EEGKRDHQGQ GQVEESSMGN  240
KINPVDNVRN EDGAKSSSSS SLMMIMRDKK KRKRKKKERF GVLKGFCEGL VRNMIVQQEE  300
MHKKLLEDMV KKEEEKMARE EAWKKQEMER LNKEVEIRAN EQAMASDRNT SIIKFICKFT  360
GHDNHDDGNG MVQSPRPSQD SSSLVLPKTQ GRRKCQTSSS LLPQALTPHN PISLQTNDIP  420
LEPISTETLK TKTQNRKPPL SDEKSDTGKR WPRDEVLALI NIRRSISSIN DDDHHKGGIS  480
LSSSSSKAVP LWERISKKML ESGYKRSAKR CKEKWENINK YFKKTKNVNK KRPLDSRTCP  540
YFHQLTALYS QPTTTATDTS TGELETRVGS GDSVMHVDAN GAGEKSNVQF SGFDLALP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	276	KKKRKRKKK
2	269	274	KKRKRK
3	269	276	KKRKRKKK
4	270	276	KRKRKKK
5	271	275	RKRKK
6	271	277	RKRKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00120548001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013677968.1	0.0	trihelix transcription factor GTL2
Swissprot	Q8H181	0.0	GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBL	A0A3P6E5R7	0.0	A0A3P6E5R7_BRAOL; Uncharacterized protein
STRING	Bo2g152980.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8268	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106382489

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]