PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00119740001 | ||||||||
Common Name | GSBRNA2T00119740001, LOC106422695 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 376aa MW: 42283 Da PI: 7.1877 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.9 | 4.1e-32 | 194 | 248 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ GSBRNA2T00119740001 194 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSEGLTIFHVKSHLQKYRI 248 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 193 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-17 | 193 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-23 | 194 | 249 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-8 | 198 | 247 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.1E-20 | 278 | 325 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 376 aa Download sequence Send to blast |
MDNINFETSN ASQGSRLHLH SQSQPPQLFN LQDVNMNHYN QSSPWTSETF SGYTPYDSTV 60 NQSLSVQCSS SKPCHALFHP YHHQSSDHPS VDQSQSMVPM QLLQDQYLKP LYQKSCANDF 120 AATNASSSSY SLSFDASQDP QELCRRTYST SNVTQLDFSS SHHQAKQTHP RFSSHSFSAH 180 GGSMAPNCGT VGNKTRIRWT QDLHEKFVEC VNRLGGADKA TPKAILKLMD SEGLTIFHVK 240 SHLQKYRIAK YIPDYQEGKF EKGSCSKELS QLDTKTGVQI KEALQLQLDV QRHLHEQLEI 300 QRNLQLRIEE QGKQLKIMIE QQQKTKECLL LKSPNAEASL SHSASDHSPP PYSIQDAEAL 360 MLTTYGDTQF QSKIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-23 | 194 | 251 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00119740001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022553873.1 | 0.0 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 0.0 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A398A5D8 | 0.0 | A0A398A5D8_BRACM; Uncharacterized protein | ||||
STRING | Bra028717.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5476 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-180 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106422695 |
Publications ? help Back to Top | |||
---|---|---|---|
|