PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00118629001
Common NameGSBRNA2T00118629001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 369aa    MW: 41267.8 Da    PI: 4.8946
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00118629001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-172269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed+ll  +v ++G g+W+++ ++ g+ R++k+c++rw ++l
  GSBRNA2T00118629001 22 KGPWTSAEDQLLTAYVDKHGEGNWNAVQKHSGLSRCGKSCRLRWVNHL 69
                         79*******************************************996 PP
2Myb_DNA-binding422.1e-1375118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g +T  E+++ +++++ +G++ W++ a+ ++ gRt++++k++w++
  GSBRNA2T00118629001  75 KGGFTDKEEQRVIELHASMGNK-WARMAAQLP-GRTDNEIKNFWNT 118
                          6789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.421769IPR017930Myb domain
SuperFamilySSF466892.5E-2820116IPR009057Homeodomain-like
SMARTSM007171.4E-142171IPR001005SANT/Myb domain
PfamPF002492.5E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-232376IPR009057Homeodomain-like
CDDcd001674.26E-112469No hitNo description
PROSITE profilePS5129422.56270124IPR017930Myb domain
SMARTSM007174.3E-1374122IPR001005SANT/Myb domain
PfamPF002493.0E-1275118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2477122IPR009057Homeodomain-like
CDDcd001673.54E-978120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGKVLHDSES GQDFAVEKTF HKGPWTSAED QLLTAYVDKH GEGNWNAVQK HSGLSRCGKS  60
CRLRWVNHLR PSLKKGGFTD KEEQRVIELH ASMGNKWARM AAQLPGRTDN EIKNFWNTRL  120
KKLQRLGLPI YPDEVREQAM NAAVQNGQNS DHSQESLEPD CLEIPEFDFK YLQLNNYQSV  180
LLRNVPMGSP YMSPPKRKRV REPETDFLDT GGYAANEQSG QLWNYPFVES NAAKYSSPSE  240
KLELPSFQCC DPLGDWETQH SNPMLAVESD STLVESPLTD CPSSGLLESV VYGSSGEKQA  300
TNSTDPDSPL LLQSSLFGHI ELTPAFANNT ETDMVPFGPT SSSERLTSSL ESSDWIRQLL  360
GEDRDYTK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27221227106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00118629001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765471e-134KR076547.1 Brassica napus MYB transcription factor 81-1 (MYB81-1.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018508834.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB104
SwissprotQ9SM274e-84MY104_ARATH; Transcription factor MYB104
TrEMBLM4D6C90.0M4D6C9_BRARP; Uncharacterized protein
STRINGBra012038.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91982138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.11e-131myb domain protein 81
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]