PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00116501001
Common NameGSBRNA2T00116501001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 239aa    MW: 26668.3 Da    PI: 6.5112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00116501001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-0663116154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +++  +++Er RR r+  ++ +L +llP  s+ ++kK    +i  ++v YI +L
  GSBRNA2T00116501001  63 KKQERSANERLRRLRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPKL 116
                          5778899**********************87888889**************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-956129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-460121No hitNo description
Gene3DG3DSA:4.10.280.103.7E-762137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.09662116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001368122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDNHQTFASS LLDVDDLLHI PAETIGASGE KDDTCPIQSE SKGKEVVVVL HDQDAHAPSS  60
VAKKQERSAN ERLRRLRLHA SYLTLGTLLP DHSSSSKKKW CAPSIMDRVV TYIPKLHNEV  120
EELTLRKQKL VEAIESRRSR VLVPQDPHNR TISVLELEGS GGEVVVQISM KRVKEDEFSN  180
LIHVMEMQGF SILSASTSLV CRDQRVVCYN FHGKIDEKPS EGEDYITVLK NNIISTLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00116501001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127854.11e-175PREDICTED: uncharacterized protein LOC103852708 isoform X1
SwissprotF4I8F97e-86BH160_ARATH; Transcription factor bHLH160
TrEMBLM4CUS31e-174M4CUS3_BRARP; Uncharacterized protein
STRINGBra007968.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.13e-88bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]