PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00112450001
Common NameGSBRNA2T00112450001, LOC106355312
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 146aa    MW: 16094 Da    PI: 7.2882
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00112450001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19.1e-1391140154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          +++kGVr ++ +g+W AeI+dps+   ++r +lg+f t ++A + +++a  ++ 
  GSBRNA2T00112450001  91 KKHKGVRKKP-SGKWSAEIWDPSI---KARRWLGTFPTYDMAVQSYEEAEYEIA 140
                          589****999.7*********965...69*********99********998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-1991145No hitNo description
SuperFamilySSF541714.18E-1292143IPR016177DNA-binding domain
SMARTSM003808.4E-1192145IPR001471AP2/ERF domain
PROSITE profilePS5103217.58392145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-1692143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MNNSENVQSY VQNENFTPVS QPSYLTRDQE HEIIVSTLRQ VISSPGGDTS SSNWIASEAL  60
PPPDAGPCPI CGVTGCYGCA FPRPAEIKKE KKHKGVRKKP SGKWSAEIWD PSIKARRWLG  120
TFPTYDMAVQ SYEEAEYEIA GRRSA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00112450001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009103814.11e-105PREDICTED: putative ethylene-responsive transcription factor ERF121
RefseqXP_013650740.21e-105putative ethylene-responsive transcription factor ERF121
SwissprotQ9FGC92e-68EF121_ARATH; Putative ethylene-responsive transcription factor ERF121
TrEMBLA0A397YK601e-104A0A397YK60_BRACM; Uncharacterized protein
TrEMBLM4D6L41e-104M4D6L4_BRARP; Uncharacterized protein
STRINGBra012123.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67010.17e-61ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]